• Overview
• Integration Steps
  • Install TORQUE/PBS
  • Install Moab
  • Configure TORQUE/PBS
  • TORQUE/Moab Considerations
• Current Limitations
• Troubleshooting

Overview

Moab can be used as an external scheduler for the PBS resource management system. In this configuration, PBS manages the job queue and the compute resources while Moab queries the PBS Server and the PBS MOM's to obtain up to date job and node information. Using this information, Moab directs PBS to manage jobs in accordance with specified Moab policies, priorities, and reservations.

Assistance from Adaptive Computing on integrating PBS Pro and Moab requires a special license. Please contact us at [email protected] or call us at (801) 717-3700.

Integration Steps

Moab manages PBS via the PBS scheduling API. The steps below describe the process for enabling Moab scheduling using this API.

Install TORQUE/PBS

• Install TORQUE/PBS

Keep track of the PBS target directory, $PBSTARGDIR

Install Moab

• Untar the Moab distribution file.
• Change the directory to the moab-<X> directory.
• Run ./configure.
• Specify the PBS target directory ($PBSTARGDIR from step 2.1) when queried by configure.

Moab interfaces to PBS by utilizing a few PBS libraries and include files. If you have a non-standard PBS installation, you may need to modify Makefile and change PBSIP and PBSLP values and references as necessary for your local site configuration.

The configure script automatically sets up Moab so that the user running configure will become the default Primary Moab Administrator ($MOABADMIN). This can be changed by modifying the 'ADMINCFG[1] USERS= <USERNAME>' line in the Moab configuration file (moab.cfg). The primary administrator is the first user listed in the USERS attribute and is the ID under which the Moab daemon runs.

Some Tru64 and IRIX systems have a local libnet library that conflicts with PBS's libnet library. To resolve this, try setting PBSLIB to '${PBSLIBDIR}/libnet.a -lpbs' in the Moab Makefile.

Moab is 64-bit compatible. If PBS/TORQUE is running in 64-bit mode, Moab likewise needs to be built in this manner to use the PBS scheduling API (i.e., for IRIX compilers, add '-64' to OSCCFLAGS and OSLDFLAGS variables in the Makefile).

General Configuration For All Versions of TORQUE/PBS

• Make $MOABADMIN a PBS admin.
  • By default, Moab only communicates with the pbs_server daemons and the $MOABADMIN should be authorized to talk to this daemon. (See suggestions for more information.)
• (OPTIONAL) Set default PBS queue, nodecount, and walltime attributes. ( See suggestions for more information.)
• (OPTIONAL - TORQUE Only) Configure TORQUE to report completed job information by setting the qmgr keep_completed parameter:
  moab.cfg

  > qmgr -c 'set server keep_completed = 300'
  

PBS nodes can be configured as time shared or space shared according to local needs. In almost all cases, space shared nodes provide the desired behavior.

PBS/TORQUE supports the concept of virtual nodes. Using this feature, Moab can individually schedule processors on SMP nodes. The online TORQUE documentation describes how to set up the '$PBS_HOME/server_priv/nodes' file to enable this capability. (For example, <NODENAME> np=<VIRTUAL NODE COUNT>)

Version-Specific Configuration for TORQUE, OpenPBS or PBSPro 6.x or earlier

Do not start the pbs_sched daemon. This is the default scheduler for PBS/TORQUE; Moab provides this service.

Moab uses PBS's scheduling port to obtain real-time event information from PBS regarding job and node transitions. Leaving the default qmgr setting of 'set server scheduling=True' allows Moab to receive and process this real-time information.

Version-Specific Configuration for PBSPro 7.1 and higher

PBSPro 7.x, 8.x, and higher require that the pbs_sched daemon execute for proper operation, but PBS must be configured to take no indpenedent action that conflicts with Moab. With these PBSPro releases, sites should allow pbs_sched to run after putting the following PBS configuration in place:

> qmgr -c 'set server scheduling = false'
> qmgr -c 'set server scheduler_iteration = 100000000'
> qmgr -c 'unset server node_fail_requeue' 

preemptive_sched: false ALL

Configure Moab

By default, Moab automatically interfaces with TORQUE/PBS when it is installed. Consequently, in most cases, the following steps are not required:

• Specify PBS as the primary resource manager by setting RMCFG[base] TYPE=PBS in the Moab configuration file (moab.cfg).

Moab's user interface port is set using the SCHEDCFG parameter and is used for user-scheduler communication. This port must be different from the PBS scheduler port used for resource manager-scheduler communication.

TORQUE/Moab Considerations

The default meaning of a node for TORQUE and Moab are not the same. By default, a node is a host in TORQUE. The node may have one or more execution slots (procs) allocated to it in the $TORQUE_HOME/server_priv/nodes file. However, the number of nodes recognized by TORQUE is equivalent to the number of node entries in the $TORQUE_HOME/server_priv/nodes file. A node specification from qsub such as -1 nodes=2:ppn=2 will direct TORQUE to allocate to execution slots on two separate nodes.

Moab is more liberal in its interpretations of a node. To Moab, the qsub request above would be interpreted to mean allocate four tasks with at least two tasks on a node. Where TORQUE would require two nodes for the request, Moab will place all four tasks on the name node (host) if four execution slots are available.

If a cluster has four nodes with eight processors each, TORQUE still sees only four nodes. Moab sees 32 nodes. However, if a user made a qsub request with -1 nodes=10, TORQUE would reject the request because there are only four nodes available. To enable TORQUE to accommodate Moab's more liberal node interpretation, the server parameter available_resources.nodect can be set as a server parameter in TORQUE. The value of available_resources.nodect should equal at least the number of execution slots in the cluster.

For our example, cluster available_resources.nodect should be 32. With this parameter set, the user can now make a request such as -1 nodes=8:ppn=2. In this example, the user is still limited to a maximum node request of 32.

With available_resources.nodect set in TORQUE, Moab can be directed to honor the default TORQUE behavior by setting JOBNODEMATCHPOLICY to EXACTNODE.

PBS Features Not Supported by Moab

Moab supports basic scheduling of all PBS node specifications.

Moab Features Not Supported by PBS

PBS does not support the concept of a job QoS or other extended scheduling features by default. This can be handled using the techniques described in the PBS Resource Manager Extensions section. See the Resource Manager Extensions Overview for more information.

Some Versions of PBS Do Not Maintain Job Completion Information

An external scheduler cannot determine if the job completed successfully or if internal PBS problems occurred preventing the job from being properly updated. This problem will not in any way affect proper scheduling of jobs but may potentially affect scheduler statistics. If your site is prone to frequent PBS hangs, you may want to set the Moab JOBPURGETIME parameter to allow Moab to hold job information in memory for a period of time until PBS recovers. (Note: It is not recommended that PURGETIME be set to over 2:00).

Troubleshooting

On TRU64 systems, the PBS 'libpbs' library does not properly export a number of symbols required by Moab. This can be worked around by modifying the Moab Makefile to link the PBS 'rm.o' object file directly into Moab.